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  • Date Posted:

    07/18/14
  • Career Level:

    Experienced (Non-Manager)
  • Job Function:

    Healthcare - Other, Software Developer
  • Job Status:

    Full-Time
  • Industry:

    Biotech, Research, IT, Software
  • Contact Information:

    Employer Site
 
 
 
 
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Bioinformatics Programmer

EMMES Corporation - Rockville, MD

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The EMMES Corporation, organized in 1977, is a privately owned Contract Research Organization (CRO) located in Rockville, Maryland. EMMES is dedicated to providing statistical and epidemiological expertise, computer systems development, data management, study monitoring, regulatory guidance, and overall operational support to clients engaged in clinical and biomedical research.

 

EMMES is seeking a Bioinformatics Programmer to support clinical trials supported by the National Institutes of Health.  The programmer will build and execute next generation sequencing (NGS) data processing workflows, develop analyses tools to facilitate data interpretation, and provide data management support for ongoing clinical trials.

Primary Responsibilities

  • Establish, enhance, and benchmark NGS data processing workflows locally or in the cloud
  • Develop tools for analysis and interpretation of processed NGS and other –omics data
  • Manage large volumes of NGS data and result file collections (cloud import/export, data QC, file meta-data collection, process monitoring/tracking, etc.) as well as QC traditional clinical trial data
  • Prepare SOPs, document source code/workflows, and write reports to summarize computational requirements, processing status, and analysis results

 

Primary Requirements

 

  • B.S. or M.S. in Bioinformatics, Computer Science, or a related field
  • Demonstrated computer programming skills in scripting languages (Perl and/or Python) and statistical computing (R)
  • Experience in developing and querying relational databases (MySQL, SQLite, or similar)
  • Comfortable using Linux command line and manipulating terabyte volumes of data
  • Experience using Eclipse (or other IDEs) and Version Control software (Git, SVN, or similar)
  • Familiarity with NGS (transcriptomic/metagenomic) data, tools (Samtools, Bowtie, Tophat, Galaxy, etc.), and Amazon AWS APIs (S3, Glacier) is a plus

EMMES has an outstanding benefits package including: generous tuition reimbursement, professional development and training programs.

*For immediate consideration please submit your resume and apply directly through the company website at
www.emmes.com.

Please visit our website at www.emmes.com for additional information on our company, studies and history.

CONNECT WITH US!!
Follow us on Twitter - @EMMESCorp
Find us on LinkedIn - The EMMES Corporation

EMMES is proud to be an Equal Opportunity Employer EOE/M/F/D/V



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Company Profile

EMMES Corporation

Total Employees: 350
The EMMES Corporation, organized in 1977, is a privately owned Contract Research Organization (CRO) located in Rockville, Maryland, just outside of Washington, D.C., a short distance from NIH, FDA, and the Route I-270 biotechnology corridor. EMMES is dedicated to providing statistical and epidemiological expertise, computer systems development, data management, study monitoring, regulatory guidance, and overall operational support to clients engaged in clinical and biomedical research.
EMMES employs a full-time staff of over 350 people. Half of our employees hold advanced degrees. One-third of that group have the highest degree awarded in their fields, typically a Ph.D. or M.D. The balance holds M.P.H., M.S., or M.S.N. degrees. The largest number of advanced degrees are in the areas of statistics, epidemiology, and in the biomedical and health related fields of cell and molecular biology, physiology, biophysics, genetics, cell and developmental biology, pharmacology, microbiology, nutrition, and psychology. Almost all of our employees hold at least a B.S. or B.A. degree in the natural or physical sciences, engineering, computer science, or business administration. Our staff includes individuals who are multi-lingual in German, Russian, Farsi, French, Greek, Spanish, Portuguese, Italian and several dialects of Chinese and Indian languages.
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Didn't find what you were looking for?

Keywords

Location

  • Date Posted:

    07/18/14
  • Career Level:

    Experienced (Non-Manager)
  • Job Function:

    Healthcare - Other, Software Developer
  • Job Status:

    Full-Time
  • Industry:

    Biotech, Research, IT, Software
  • Contact Information:

    Employer Site
 
 
 
 
16
more jobs from this company
 
 
WPNI ID: 33537277