Civilian analysts gained Petraeus’s ear while he was commander in Afghanistan

Frederick and Kimberly Kagan, a husband-and-wife team of hawkish military analysts, put their jobs at influential Washington think tanks on hold for almost a year to work for Gen. David H. Petraeus when he was the top U.S. commander in Afghanistan. Provided desks, e-mail accounts and top-level security clearances in Kabul, they pored through classified intelligence reports, participated in senior-level strategy sessions and probed the assessments of field officers in order to advise Petraeus about how to fight the war differently.

Their compensation from the U.S. government for their efforts, which often involved 18-hour workdays, seven days a week and dangerous battlefield visits?

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Zero dollars.

Although Fred Kagan said he and his wife wanted no pay in part to remain “completely independent,” the extraordinary arrangement raises new questions about the access and influence Petraeus accorded to civilian friends while he was running the Afghan war.

Petraeus allowed his biographer-turned-paramour, Paula Broadwell, to read sensitive documents and accompany him on trips. But the entree granted the Kagans, whose think-tank work has been embraced by Republican politicians, went even further. The four-star general made the Kagans de facto senior advisers, a status that afforded them numerous private meetings in his office, priority travel across the war zone and the ability to read highly secretive transcripts of intercepted Taliban communications, according to current and former senior U.S. military and civilian officials who served in the headquarters at the time.

The Kagans used those privileges to advocate substantive changes in the U.S. war plan, including a harder-edged approach than some U.S. officers advocated in combating the Haqqani network, a Taliban faction in eastern Afghanistan, the officials said.

The pro-bono relationship, which is now being scrutinized by military lawyers, yielded valuable benefits for the general and the couple. The Kagans’ proximity to Petraeus, the country’s most-famous living general, provided an incentive for defense contractors to contribute to Kim Kagan’s think tank. For Petraeus, embracing two respected national security analysts in GOP circles helped to shore up support for the war among Republican leaders on Capitol Hill.

Fred Kagan, speaking in an interview with his wife, acknowledged the arrangement was “strange and uncomfortable” at times. “We were going around speaking our minds, trying to force people to think about things in different ways and not being accountable to the heads” of various departments in the headquarters, he said.

The extent of the couple’s involvement in Petraeus’s headquarters was not known to senior White House and Pentagon officials involved in war policy, two of those officials said. More than a dozen senior military officers and civilian officials were interviewed for this article; most spoke on the condition of anonymity to discuss personnel matters.

Petraeus, through a former aide, declined to comment for this article.