Lake Baikal in south-central Siberia, where Mal’ta is located. Genome of the Mal’ta child revealed that an Upper Palaeolithic population from this region mixed with ancestors of present-day East Asians, giving rise to the First American gene pool. (Niobe Thompson/Courtesy of Nature)

The genetic analysis of a 24,000-year-old arm bone from an ancient Siberian boy suggests that Native Americans have a more complicated ancestry than scientists realized, with some of their distant kin looking more Eurasian than East Asian.

The new study, published online Wednesday in the journal Nature, represents the oldest genome of a modern human ever fully sequenced.

Modern-day Native Americans share from 14 to 38 percent of their DNA with the Siberian hunter-gatherers — who are not closely related to East Asians — with the remainder coming from East Asian ancestors. Most scientists have thought that the first Americans came only from the East Asian populations.

“If you read about the origins of Native Americans, it will say East Asians somehow crossed the Bering Sea,” said study author and evolutionary biologist Eske Willerslev at Copenhagen University. “This is definitely not the case — it’s more complex than that.”

It isn’t known where or when the meeting of the two peoples happened, but a likely location could be Beringia, the region surrounding the current gap between Alaska and Siberia. Although presently occupied by the Bering Strait and its surrounding waters, the glaciers of roughly 20,000 years ago locked up much of the earth’s water, exposing a land bridge between the two continents.

Native American ancestry: It's complicated

AUDIO: Researcher Eske Willerslev discusses what ancient genomes reveal about Native American ancestry.

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Source: Nature

The prehistoric crossroad provided an easy way for people, animals and plants to spread.

Originally excavated in the 1950s, the remains of the boy had been tucked away in the bowels of a museum in St. Petersburg. He was about 3 when he died, and he was buried with a variety of “grave goods,” including a swan figurine and an ivory pendant.

When Willerslev sequenced the DNA from the boy’s upper arm bone, he thought the results were a mistake: It said the boy belonged to a lineage commonly found among Europeans, but not in East Asians.

“We put the study on hold for a year because I thought it was contamination,” Willerslev said.

Burial of Mal'ta child redrawn from Gerasimov in 1935, with photos of the plaque and swan from the burial and a representative Venus figurine from the excavation. (Kelly E. Graf/Courtesy of Nature)

They tried again, this time digging deeper and looking at the Y chromosome. It and the rest of the genome told the same story: The boy had links to present-day western Eurasians and Native Americans, but not East Asians.

They also sequenced a more recent Siberian adult whose DNA wasn’t as well preserved, and they got similar results.

“They were members of a really cosmopolitan group that probably reflect early modern humans leaving Africa and spreading into central Asia,” said study author Kelly Graf, a Texas A&M anthropologist.

Their results support fossil evidence from early Paleo-Indian humans, such as a well-preserved skeleton known as Kennewick man found in Washington state. Dated to about 9,000 years old, he has facial features that don’t look East Asian but rather somewhat Caucasian — a mystery found replicated in other skulls.

The fact that the first Americans were already mixed to begin with could answer these controversies, Willerslev said. Any Western Eurasian genetic signatures found in Native Americans today were previously attributed to post-1492 colonial mixing with Europeans.

“Maybe it has much deeper roots — from Siberia, not Europeans coming over in their boats,” Graf said.

Graf and Willerslev said their next step is to gather DNA samples of early American populations to find evidence of those proto-Eurasian roots in the New World.

Meeri Kim is a freelance science journalist based in Philadelphia.