EL PASO — The nation’s top border official warned that the U.S. immigration enforcement system along the nation’s southern boundary is at “the breaking point” and said Wednesday that authorities are having to release migrants into the country after cursory background checks because of a crush of asylum-seeking families with children.

Kevin McAleenan, the commissioner of U.S. Customs and Border Protection, said that for the first time in more than a decade, his agency is “reluctantly” performing direct releases of migrants, meaning they are not turned over to Immigration and Customs Enforcement, they are not detained, they are not given ankle bracelets to track their movements and they are allowed to leave with just a notice to appear in court at a later date.

He said that this is a “negative outcome” but that it is “the only current option we have” because of overcrowding at detention facilities as Central Americans stream to the border knowing they will be able to gain entry with asylum claims.

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The number of migrant families coming to the border has reached new highs month after month, a trend that dramatically accelerated after President Trump announced parents and children would no longer be separated, reversing course on his “zero tolerance” crackdown.

McAleenan said the agency detained more than 4,100 migrants Tuesday, the highest one-day total at the border in more than a decade, and agency projections have border apprehensions on pace to exceed 100,000 this month — an increase of more than 30 percent. By comparison, at the height of the last border crisis, in May 2014, agents apprehended more than 68,800 migrants that month.

The massive influx of families seeking asylum has strained almost every aspect of U.S. operations on the border, McAleenan said, nowhere more evident than here, along the Rio Grande. Crossings have been overwhelmed with hundreds of migrants seeking asylum daily; Border Patrol stations are crammed and have no space for detainees; the immigration court system is backed up with hundreds of thousands of cases; and health services are having to triage batches of patients who have a variety of ailments and communicable diseases.

“That breaking point has arrived this week,” McAleenan said, standing in front of a border fence. “CBP is facing an unprecedented humanitarian and border security crisis all along our southwest border, and nowhere has that crisis manifested more acutely than here in El Paso.”

“If they don’t have a valid claim, we’ll repatriate,” McAleenan said. “If they do, they’ll be released with the certainty that they have asylum with the ability to plan, to invest in a business, to make these choices for schools. Right now, they don’t have that. They live with uncertainty for years at a time because the system is broken and overwhelmed.”

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CBP officials say they are particularly alarmed by the soaring number of unaccompanied juveniles in crowded detention cells because Health and Human Services can’t place them in shelters fast enough. CBP officials said they have 1,350 underage migrants in holding cells without a parent — and 20 percent are 12 years old or younger.

McAleenan said the overwhelming numbers and “inadequate capacity to detain families and children at ICE and HHS” is at the heart of the crisis.

By law, the minors should remain in CBP custody for the shortest amount of time as possible and not in excess of 72 hours. But CBP officials privately acknowledged Wednesday that they are keeping them in custody longer, in potential violation of a court order, because HHS doesn’t have anywhere to put them, a situation leaving CBP with “no legal options.”

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The agency is reassigning agents to respond to and care for children, including U.S. agents who were sent south from the Canadian border this week.

But Evelyn Stauffer, an HHS spokeswoman, said the agency “continues to receive children referred to our care from the Department of Homeland Security and place them in an appropriate shelter as safely and quickly as possible.” She said the agency could expand emergency facilities to handle an influx, as they also did under the Obama administration. There are 12,000 minors currently in HHS custody.

Near where McAleenan spoke Wednesday, an improvised holding pen beneath a highway overpass is serving as a processing center. U.S. agents have been interviewing hundreds of parents and children in a dusty parking lot. Just before the commissioner began speaking, a group of nine parents and children from El Salvador and Panama traversed the Rio Grande, and agents led them to the processing center on foot.

McAleenan’s plea for help reflects the growing desperation among Homeland Security officials faced with a border influx that is on pace to be the largest in more than a decade, led by Guatemalan and Honduran asylum seekers who arrive with children and surrender to U.S. agents. McAleenan said his agency currently has more than 13,000 migrants in its custody.

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“A high number is 4,000,” he said. “Six-thousand is crisis level. Thirteen-thousand is unprecedented.”

Some of the migrants have been seriously ill, including infants with 105-degree fevers, a 2-year-old suffering seizures in the desert, a 19-year-old woman with a congenital heart defect who needs emergency surgery and a 40-year-old man suffering from multiple-organ failure. Others have lice, the flu and chickenpox.

“We are doing everything we can to simply avoid a tragedy in a CBP facility,” McAleenan said. “But with these numbers, with the types of illnesses we’re seeing at the border, I fear that it’s just a matter of time.”

He blamed the surge on smugglers and U.S. laws that he said encourage illegal migration because migrants are virtually guaranteed to be released in the United States.

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“There’s no questioning why this is happening,” he said.

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The amount of resources needed to handle the surge is diverting Border Patrol agents from other duties, including security work aimed at drug interdiction and interior checkpoints. Guadalupe Correa-Cabrera, an associate professor of policy and government at George Mason University who researches migration, smuggling and criminal organizations, said it is risky to divert Border Patrol agents from their main security mission.

While McAleenan was emphasizing the need for more resources and legal authority to keep people from the U.S. interior, advocacy groups said the Trump administration should instead treat the migrants as refugees and invest in foreign aid. Migrants are streaming out of Central America for a complex set of reasons — including drought, poverty, violence and political instability — problems that will persist regardless of U.S. border policy.

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“They don’t need new money. They need a new strategy,” said Frank Sharry, executive director of America’s Voice, an immigrant advocacy group. “They think that if we’re just tough enough, people will stop coming. That completely misreads what’s happening.”

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As migrant numbers have surged upward, thousands more Central Americans are waiting in Mexico, at shelters in Ciudad Juarez, and U.S. officials say they probably will cross the river in coming days and weeks.

Although Border Patrol apprehensions remain below their annual peak of 1.6 million in 2000, the nature of the increasing migration flows has shifted dramatically, and that shift is driving the alarm. In prior eras, most of the migrants were adult men who could be easily deported to Mexico; now, many of those attempting to cross the border are asylum-seeking Central American families and, to a lesser degree, minors traveling on their own. Because those seeking asylum have a legal right to have their cases evaluated, most families are released into the United States to await hearings in clogged immigration courts, a process that can take months or years.

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McAleenan’s appeal came amid heated debate in Congress over the border situation. Trump declared a national emergency in February after a government shutdown failed to secure the funding he wanted for construction of a border wall. Congress sent him a bipartisan resolution that sought to nullify his declaration, but the president vetoed it. On Tuesday, a House vote seeking to override the veto failed.

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House Speaker Nancy Pelosi (D-Calif.) and Rep. Joaquin Castro (D-Tex.) called it a “sham emergency” on Tuesday.

“The Trump administration has withheld the money Congress appropriated to improve conditions in the Northern Triangle countries, wasted funds on an ineffective wall and refused to work with Congress on a comprehensive solution,” Drew Hammill, a spokesman for Pelosi, said in a statement. “Every action this administration has taken over the past two years has increased the numbers of families, women and children coming to the border.”

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The migrants arriving in El Paso are crossing the Rio Grande, arriving in a place where the United States already has formidable, modern border barriers. By surrendering to agents on U.S. soil — the strip of land between the river and the tall U.S. fencing — the migrants can assert their legal right to seek asylum. Border Patrol holding cells in the Rio Grande Valley of South Texas also are overcrowded, as are facilities in Arizona.

The most dangerous overcrowding is here in the El Paso area, where Border Patrol stations are at 300 percent to 400 percent capacity. Most parents who arrive with a child are issued an appointment with an immigration judge. But agents are so overwhelmed by the volume that they often do little more than a cursory screening, officials said.

CBP is supposed to be a fast-track system that books migrants into custody, checks their fingerprints and sends them to other agencies.

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Families and single adults are referred to ICE, which conducts additional checks and detains or releases them to await a court hearing. Families can be detained, but space is limited to roughly 3,000 people.

The border security compromise Democrats reached with Trump last month includes $415 million to improve medical care and detention conditions for families and children in U.S. custody, including the construction of a new child-appropriate processing center in El Paso. But that facility is not likely to open for at least six months, CBP officials say.

Gil Kerlikowske, CBP commissioner under the Obama administration during the border surge of 2014, when officials were pitching emergency tents and holding large flows of unaccompanied minors in a converted warehouse near McAllen, Tex., cautioned Wednesday that the latest migration projections are “an amazing number.”

“It really is a significant issue,” said Kerlikowske, who headed the agency from March 2014 until January 2017. “Resources and space are going to need to be devoted to dealing with this.”

Department of Homeland Security Secretary Kirstjen Nielsen met with senior Mexican officials in Miami on Tuesday for unannounced talks, telling her counterparts that cross-border trade and commerce are likely to suffer as more CBP officers are pulled away to cope with the migration surge.

CBP is preparing to temporarily reassign 750 blue-uniformed officers from its Office of Field Operations to help the Border Patrol, according to a senior DHS official, and Nielsen told Mexican interior minister Olga Sánchez Cordero that move probably will produce longer wait times for trucks and vehicles seeking to cross. 

“Secretary Nielsen said very bluntly that if we didn’t work jointly, our resources are pulled away, and that creates problems for us and on the Mexican side in terms of facilitating commerce, and we want to avoid that,” said the senior DHS official, who spoke on the condition of anonymity to discuss sensitive negotiations. 

Nielsen also is readying a plan to ask volunteers from the U.S. Coast Guard, Transportation Security Administration and other Homeland Security agencies to go to the border to help with the flood of Central American families, the official said, adding: “We are burning red hot right now, and we are looking everywhere for help.” 

Nielsen arrived in Honduras on Tuesday to meet with Central American leaders, in talks aimed at increasing efforts to deter migration to the United States and to crack down on smuggling organizations.

Sacchetti reported from Washington.